DreALTD0002332-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000093656 | ZNF784 (4 of 6)
Description
zinc finger protein 784 [Source:HGNC Symbol;Acc:HGNC:33111]
Coordinates
chr13:44690445-44694216:-
Coord C1 exon
chr13:44694116-44694216
Coord A exon
NA
Coord C2 exon
chr13:44690445-44691378
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTTGTATGT
5' ss Score
2.51
3' ss Seq
TCTCTAATCTGTTTCATTAGATG
3' ss Score
6.83
Exon sequences
Seq C1 exon
AGACACTTAAAGACCTGAGGAGGGCAGCAGAGCGCCTCTATGCGTCTAAAATAGATGTCAGAAGAAGAAGATGGTCGCCCTGAGGAGAAAGTTGTTGATTT
Seq A exon
NA
Seq C2 exon
ATGTTGGAGTCCAGCCTGCATCAATATGAAGCCTGTGATCAACAATGAAGAGTCTTATCAGGGAGATCCAGAGTCCAAATCCACTTATAATGATGTAGAAACTTTGGTTCTGAGTAAAACAGAAGGATCGGCTGCTCTCTTTTGCAGACGGCTGAAATATCGAGTAAAAACTGATGAAACATCAGATCAAAGTTCACCAGATACTGACACAGAAGATGAGCTTCCCATCTCCACATCTCCAACCCCTGGTAAAAAGTTTGTCTGTAAGCTGTGTGGTTTTGAGTTTACTTATAATTCAAATATGGTGCGTCACATGCGAATACACACAGAAGAGACGCCATACGTCTGTGAAATCTGTGGGAAAGGGTTCAAACGTCAAGATTGGCTTAAACTGCACATCAGCGTTCATACTGGTGTCAAACGCAAACGCAAGAAGAAATTCAGCTGTGATCAGTGTGAGAAGAAGTTTCATGGTTCCACAGCTCTCCGAAGCCATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093656-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=10.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCCCTGAGGAGAAAGTTG
R:
TTGGACTCTGGATCTCCCTGA
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]