DreALTD0002333-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000095497 | ZNF784 (6 of 6)
Description
zinc finger protein 784 [Source:HGNC Symbol;Acc:HGNC:33111]
Coordinates
chr13:44694671-44701255:-
Coord C1 exon
chr13:44701155-44701255
Coord A exon
chr13:44701151-44701154
Coord C2 exon
chr13:44694671-44695622
Length
4 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATGTTTATGTCTTTATTCAGTCT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTCTGCCCAAATATCAGAAGAAGAAGAAGATGCTCGTACAAAACAGGACAATCATGACCCAACGATGTTGGCAAAATAAATAACTCTTGATTGATTAATAG
Seq A exon
GCAT
Seq C2 exon
TCTGTTTCACTAGATGTTTGCTTGAAGTCCGGACTGCATCGATATGAAGCCTGTGATCAACAATGAAGAGTCACTTCAGGGAGATCCAGAGTCCAAATCCACTAATAATGATGTGGAAACTTTGGTTCTGAGTAAAACAGAAGGATCGGCTGCTCTCTTTTGCAGACGGCTGAAATATCGAGTAAAAACTGATGAAACATCAGATCAAAGTTCATCAGATACTGACACAGAAGATGAGCTTCCCATCTCCACATCTCCAACCCCTGGTAAAAAGTTTGTCTGTAAGCTGTGTGGTTTTGAGTTTACTTATCATTCAAATATGGTGCGCCACATGCGAATACACACAGGAGAGACGCCATACGTCTGTGAAATCTGTGGGAAAGGGTTCCAACGTCAAGACTGGCTTAAAGAACACTTTCGGGTCCATACTGGTGTCAAACGCAAACGCAAGAAGACATTCGGCTGTGATCAGTGTGAGAAGAAGTTTCATGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095497-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102634=SprT-like=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=10.1),PF156161=TerY-C=WD(100=51.6),PF134651=zf-H2C2_2=WD(100=11.7),PF134651=zf-H2C2_2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=10.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGACAATCATGACCCAACG
R:
CGATGCAGTCCGGACTTCAAG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]