DreALTD0002640-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000018968 | acvr1ba
Description
activin A receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-980526-527]
Coordinates
chr23:27880969-27883097:-
Coord C1 exon
chr23:27882855-27883097
Coord A exon
chr23:27882813-27882854
Coord C2 exon
chr23:27880969-27881214
Length
42 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
3' ss Seq
CTTTTACCTGCCTCTTTCAGGGA
3' ss Score
11.02
Exon sequences
Seq C1 exon
CTCTCAAGTGTAACTGCACTGCTTGTGAGAGCACAGGTTATGTGTGCGAGACAGATGGGGCCTGCATGGCCTCCACATCCTACATCAATGGGCAGGAAGAGCAGCAAGTACGGATCTGCATCCCTCGGGTCAGCCTGGTTCCTCCTGGACAGCCCATCTACTGCTTGAGCGCTAAAGGCCTGCTCAACACGCACTGCTGTTACACAGACTTCTGCAACAGCATCAACCTCCAGATTCCCAATG
Seq A exon
GTAGCAGTACAGGCCAAACACAATACCTTTCAAATGTTTGGG
Seq C2 exon
GGATTGCTGATGGTAAAGGAGGTAGTTGGGGTCCGGTAGAGCTGGTGGCAGTGATAGCAGGCCCGGTCTTCCTCTTTTGCCTGCTGCTTATCGTGGGAGTGCTCCTTTTCCAGCACCACCAACGAAACTATAACCACCGGCAGCGACTGGATGTTGAGGATCCATCCTGTGATCACCTGTACTTGGCCAAAGACAAGACCTTACAGGATCTCATCTTCGATCTGTCCACCTCTGGTTCAGGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018968-8-4,9-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGCACTGCTGTTACACA
R:
GCAGCAGGCAAAAGAGGAAGA
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]