DreALTD0002642-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000011188 | acvr2aa
Description
activin A receptor, type IIAa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
Coordinates
chr9:25597725-25608439:-
Coord C1 exon
chr9:25608330-25608439
Coord A exon
chr9:25608282-25608329
Coord C2 exon
chr9:25597725-25597879
Length
48 bp
Sequences
Splice sites
5' ss Seq
AGGGTATTG
5' ss Score
3.84
3' ss Seq
GTTGTTTTTTCTCTCATCAGCGA
3' ss Score
7.53
Exon sequences
Seq C1 exon
CACTGAGTGTGTGGAGAAGAAGGAGGACCCAGATGTGTTCTTCTGCTGCTGTGAGGGCAATATGTGCAACGAGAAGTTCTTCTACAATCCCAACACGGCGCCAGTTCAGA
Seq A exon
GTAAGGCTCCATTCAGCGACACAAAAAGCGACACAAAAGTCTTTAAGG
Seq C2 exon
CGACATCAAACCCCTTGACCCAGAAGCCGCCACTGTTCAGTACCCTTCTGTACTCCATCGTGCCCATCATGGGCATTGCAGCCATTGTCCTGCTCTCCTTCTGGATGTATCGGCATCACAAGTTGGCATACCCTCCTGTTCTGGTGCCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011188-6-7,7-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(32.6=78.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGTGAGGGCAATATG
R:
ATGGGCACGATGGAGTACAGA
Band lengths:
134-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]