DreALTD0003099-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000074777 | ank1b
Description
ankyrin 1, erythrocytic b [Source:ZFIN;Acc:ZDB-GENE-091113-6]
Coordinates
chr21:20991433-20991878:-
Coord C1 exon
chr21:20991756-20991878
Coord A exon
NA
Coord C2 exon
chr21:20991433-20991513
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
GCAATATTTTCTCCTTACAGAAG
3' ss Score
8.66
Exon sequences
Seq C1 exon
CAGGAGAAAGACTCCCTCCACAGCTGGTCTCAACCCAAACCCAGGCAGACCATGGAGACCATGATGTCATCGTCCCCGGACCACAATCAGTCACGTGTAGCACAGGAGGCCCTGCTTACACCG
Seq A exon
NA
Seq C2 exon
AAGGATGATCCAGTAGATCTCAGCAGTGATCTTCTACATGAAGAGCAGTTCACTGATGAGCATGGGAATGTTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074777-50-48,51-48-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=NA C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGACTCCCTCCACAGCT
R:
TGGTCACAACATTCCCATGCT
Band lengths:
198-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]