DreALTD0003115-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7620912-7631399:-
Coord C1 exon
chr12:7631354-7631399
Coord A exon
NA
Coord C2 exon
chr12:7620912-7620986
Length
0 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGC
5' ss Score
5.9
3' ss Seq
TTTTCCTTTTCTGCTCTCAGGCC
3' ss Score
11.26
Exon sequences
Seq C1 exon
ACTGAAAAGCCAGAACGACGTCATACCTTTGCATCTCTAGCCTTAC
Seq A exon
NA
Seq C2 exon
GCCCTCAGACCCCCTGTGAAAGAACAGATTTGCGAATGGCTATTGTAGCAGATCATCTCGGCCTGAGTTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-53-49,54-49,55-49-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(18.1=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAAAGCCAGAACGACGT
R:
TCCAACTCAGGCCGAGATGAT
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]