DreALTD0003116-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7617114-7620299:-
Coord C1 exon
chr12:7620219-7620299
Coord A exon
chr12:7620156-7620218
Coord C2 exon
chr12:7617114-7617801
Length
63 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
CACTGTGTTGTATCACTCAGGTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
CGGATGCCTTAGCTGCGGTCCTGACTAAGATCAATCGGTTGGATATTGTGACATTGCTGGAAGGGCCGATATTTGACTATG
Seq A exon
GTAACATTTCAGGCACAAGATGTTTTGCAGATGATAGCGCAGTTTCCCAGGAGCAGGCTGATG
Seq C2 exon
GTTACCACAACATTGAGCTGGAGCTCAAGAGTCCCACAGAGCTGAACTATGAACCCCCTACCCCTCTACGTCATGATGATTTCTTTAGTGAAGACAGTATGCTTAAGTTCTCCTCTAGTGCCCCTGTTAGACCCAGTGAACTGTCCTTGCCAACCTCTAGTGGCCCAGTGTCTACAGATACTAAGCCGCCTACCGTCACGGCGGAAGACACAACTATTGGAGGCCGGGAATCCGTTGCCCAGGAAGATGGGTCCGCTGAAGATGACCTTGGTGTCAACCAGGAATTGATATCTCCCTCAAAACAGCATGACAGTGAGGAAACCTCCAAAGAATCAGATGTCTTCCCAAGCAGCCCGGTAAAAGAAAAGGATGCCCAGCCTATGCTTCCCATTTGCGCCTCTGCCAGTGAAGCTGTTAAAGAGTGTGGCAAGTCTGGGTTTGACGAAGAAGACGAAGAGATGACTCAAGATAAAATAAAGTCTCTCTTGGAGACTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-63-53,64-53-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.957
Domain overlap (PFAM):
C1:
PF0053117=Death=PD(27.7=46.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCGGTCCTGACTAAGAT
R:
CATGACGTAGAGGGGTAGGGG
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]