DreALTD0003163-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000058357 | ankrd33ba
Description
ankyrin repeat domain 33ba [Source:ZFIN;Acc:ZDB-GENE-040724-39]
Coordinates
chr24:21911524-21914627:+
Coord C1 exon
chr24:21911524-21911642
Coord A exon
chr24:21911643-21911646
Coord C2 exon
chr24:21913325-21914627
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
CCATTTACTTTCTTTATCAGGGG
3' ss Score
9.29
Exon sequences
Seq C1 exon
ACTACCTACTCAACTATTTTCCTGGGCTTGACATCGAGAAGAGGAACTGCCATGGTTTCAGCGCTCTGATGAAAGCTGCTATGCAGGGTCGAGTGGAGTGTGTCAAAGCACTGATGATG
Seq A exon
GCAG
Seq C2 exon
GGGCTGATTTGGAAGCAAGGGACAACGGGCGGAAGTTCACAGCTCGAGAGTGGGCCATCTTCACCAGCCGACACGAGACCGTCTTAACCATTATGCGGCTCATGCATCAGCCATGTGCAGATCAGTTCTGTGACAGCTATCGACCCGAATGGCCCCTTCTACCCGCACTGGTGGCCAAAGCACAGGCTCCCAAAGGCTGCATCCAAAAAATCTCAGAGACACTACGCGACTTCTTTGACATCAGCAACGTCACGGAGGCTTCAGAGGACGGTGTTCTCGATCACATGGTACGCATGACCACAGCGCTAGGCAGTCCATTCATTGCGACGTCATGTCGAACGGTGTGTCCTGGCAGCCCACCATGTGTGGGCAAACGTCGTTATGCTGTTCAGGAGATATTAAAAAAGCGACGCATTGAGCAGCTTAAAATACTCGGACCTGAACGCATCGAGAACTATAAACGTCTTTTTCAGAACTCCCGCGTCCTGCTGGTGCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058357-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(30.0=94.7)
A:
NA
C2:
PF127962=Ank_2=PD(68.3=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGCCATGGTTTCAGC
R:
TCCCTTGCTTCCAAATCAGCC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]