DreALTD0003900-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000035538 | atp6v0a2a
Description
ATPase, H+ transporting, lysosomal V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
Coordinates
chr10:8074069-8074647:-
Coord C1 exon
chr10:8074547-8074647
Coord A exon
chr10:8074506-8074546
Coord C2 exon
chr10:8074069-8074266
Length
41 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCGCACACTTGATGAGGCAGGTT
3' ss Score
-2.09
Exon sequences
Seq C1 exon
GGCTAGAATAGCGTTAAGGTGTTGGTTCGTCAACACTTCTTCATCATCTCTATAAATCCTGCGCTATTTCTGTCGTTTCAATGGCAAGGCGGCAATTAAAG
Seq A exon
GTACAGACGCCTATCGATTATTATTGTCCAGCCAGCTAGAG
Seq C2 exon
GTTGCTCGTGCTGTGTCGGAGTGAATCTCGAAGGCCAGAGGCGGATTGGGTGATCCGGGTGTCCGGGAGAGGAGAGGGAAGATGGGCTCGGGGTTTCGGAGTGAGGAGATGTGCTTGGCGCAGCTGTTCCTGCAGTCCGGCTCGGCGTACGCCTGCATCAGCGAGCTGGGGGAGATGGGACTGGTCGAATTTCGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035538-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0149614=V_ATPase_I=PU(1.6=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGTTTCAATGGCAAGGC
R:
AGCACATCTCCTCACTCCGAA
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]