DreALTD0004262-1/6 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63767160-63773292:-
Coord C1 exon
chr5:63773192-63773292
Coord A exon
NA
Coord C2 exon
chr5:63767160-63767482
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATA
5' ss Score
0.92
3' ss Seq
TTTGTTTTTTTCGCTGGCAGCGT
3' ss Score
8.3
Exon sequences
Seq C1 exon
ACCCAACCAGTGTCGACCCCAGCCATCTATTATGCTTCTTCGCAATAAAAGCTACCCGAAAATCTGCAAGGACAACGCAACCGGAGCCGCTAGGAGTGAAA
Seq A exon
NA
Seq C2 exon
CGTGCTGACACTCAGGTCCTGAGATGGGATGTGTGTGTCGAGGTGGGACTAAGGAGCAGCAAGAGGATCGTTGTAACTGAGCTACAGACGTCATTCAAGCAACAGCTTCCCCCCTGGCCAATATGTCGGCAGTCACGTCCCCTGCCCAGGTGCCTGCACCTATTGTTAACCCGCCCCCACCCGAGTTCATAAACTCTGGTAAGCCGGGCCGGAAAACCAACCAGCTACAGTACATGCAGAATGTGGTTGTGAAGACTCTTTGGAAGCATCAGTTTGCGTGGCCCTTTTACACACCTGTGGATGCAATCAAATTGAATCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129-0-0,1-0,2-0,3-0,4-0,5-0-1/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(33.3=43.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCAAGGACAACGCAACC
R:
TCCTTAGTCCCACCTCGACAC
Band lengths:
95-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]