DreALTD0004265-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078904 | brd4
Description
bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
Coordinates
chr3:52960978-52963496:+
Coord C1 exon
chr3:52960978-52961108
Coord A exon
chr3:52961109-52961114
Coord C2 exon
chr3:52963291-52963496
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTAATTTCTTTGTCCCCAGGAT
3' ss Score
11.08
Exon sequences
Seq C1 exon
GAGCAGATATGAAACCACTTGAAATGTCCCGTCCTGTGATCCGCTCGTCTGAACAGAGCGGCCCGCCTCCTTCCATGCAGGACAAAGAGAAGTTTAAACAGGAGCCCAAGACGCCCTCGGCTCCTAAAAAG
Seq A exon
GTACAG
Seq C2 exon
GATGTGAAATTTAAGAACATGGGTTCCTGGGCGAGCCTGGCACAGAAATCCTCCACCACTCCCTCGTCCGGTCTGAAGTCCTCCAGTGACAGCTTCGAGCAGTTTCGGCGTGCTGCCCGAGAGAAGGAAGAGCGAGAGAAAGCCCTCAAGGCCCAAGTCGAGCAAGCTGAGAAAGACCGGCTGCGTAAAGAACAGGAGAAACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078904-23-25,24-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAACAGGAGCCCAAGACGC
R:
GTGGAGGATTTCTGTGCCAGG
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]