DreALTD0004544-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64944997-64947573:-
Coord C1 exon
chr5:64947438-64947573
Coord A exon
chr5:64947405-64947437
Coord C2 exon
chr5:64944997-64945088
Length
33 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTCTCTGCTTGCTGTTTCAGTAA
3' ss Score
9.34
Exon sequences
Seq C1 exon
CAAGAGCAGTGAGCCAGCCCAAGAGTGCCAGGCCTACTGTGCCCATTTCCAACGCCACAAAACGAAGCTTCCTGGTGTCTCCGGGTGCGGCTGATCCAGTGCTTCCTGTTCAGAACAGCCCGGAAGTTTGTAACAG
Seq A exon
GTACTTCCTGCACCCTGAAGAATCTGAGCCTCT
Seq C2 exon
TAACAAGGGGAGTTCTGGCTTCAGCCCCTCACATCCACTTCTGCCACTGAGACAAAGACAGAAGAAAGCTCAGCCAGCAGAGGAAAGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122-13-13,14-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTGTGCCCATTTCCAA
R:
TGAAGCCAGAACTCCCCTTGT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]