DreALTD0004572-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45352657-45352963:+
Coord C1 exon
chr17:45352657-45352734
Coord A exon
chr17:45352735-45352770
Coord C2 exon
chr17:45352906-45352963
Length
36 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTTCTTCTTGTATTTTGCAGAAC
3' ss Score
11.72
Exon sequences
Seq C1 exon
CCTTCTCCGGCTTCAACTGGGGAGGAGAGCGAAGAGGACCAACAGTTCCTGTCCATTTTCCAGCACATCGCGGGGGAC
Seq A exon
GTGAGTACTGGGGAGGCAGTGAGCGCTTGGGGGAGT
Seq C2 exon
AACATGGAGGTCTCTGCCAACGAGCTTAAAGATGTCTTGAACAAGGTGGTGTCTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-19-17,20-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCAACTGGGGAGGAGAG
R:
AGACACCACCTTGTTCAAGACA
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]