DreALTD0004583-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000013804 | capns1b
Description
calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
Coordinates
chr15:29183232-29183836:+
Coord C1 exon
chr15:29183232-29183332
Coord A exon
NA
Coord C2 exon
chr15:29183764-29183836
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAC
5' ss Score
4.93
3' ss Seq
TTGTTTGATCTTATGTTTAGATT
3' ss Score
6.95
Exon sequences
Seq C1 exon
TGCAGTGTTAGTCGTAAAACCCGGTTAGATTTAGGACCCAGAGTTTCACAAAGTGGATTGGGTGTGGAGTTGCTTAGCAAGTCAAGAACAACTCGCCATCG
Seq A exon
NA
Seq C2 exon
ATTGTATTTTCCTGCCTTCAGTGTTCAAGATGTTTATGACCAAAATAATTAAAGGGCTCGTAGATGTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013804-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTTAGTCGTAAAACCCG
R:
CTGACAACATCTACGAGCCCT
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]