DreALTD0005121-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14569499-14571565:-
Coord C1 exon
chr8:14571465-14571565
Coord A exon
chr8:14571461-14571464
Coord C2 exon
chr8:14569499-14569585
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTA
5' ss Score
4.71
3' ss Seq
ACCGTAATGTCTCTGTGCAGGTA
3' ss Score
10.28
Exon sequences
Seq C1 exon
TAATGGCGGACCGTCAAATCTAGCCAACGGCCGTGGTAACTCATCGTTAAAGCCGGGAAACACACACCAAAAGGCGGGCAGTGGATACAATACACTTTTAG
Seq A exon
GTAG
Seq C2 exon
GTAGAGGTGGCAGAACCGCCAGCTGTCCAATGTGTCCAGCTGACCCGAAGACCAGGTGGACTCATGTCTGAATAAAGCTGCTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGCCGGGAAACACACACC
R:
CTGGACACATTGGACAGCTGG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]