DreALTD0005376-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000089781 | ciz1a
Description
cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
Coordinates
chr5:1215999-1217048:-
Coord C1 exon
chr5:1216861-1217048
Coord A exon
NA
Coord C2 exon
chr5:1215999-1216123
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCC
5' ss Score
6.32
3' ss Seq
TCTGTGGTGTTGTTGATCAGGCC
3' ss Score
5.89
Exon sequences
Seq C1 exon
GTTTGGTGAATGGTCAGGATGTTCAACCCTCATCAGCACCAGCAGCAGCAGCAGCATCAGTTTCATCAGCACCTCCGTCAGCTCCAGCAGCTCTTTCAGCAGCAGACGCCTCCGCCTCCGCCTCCACCTCCTCCTCCACCACAGCCTCCACCTGCACACCACATCACACACCACCACCAGGCCGCACG
Seq A exon
NA
Seq C2 exon
GCCGATGGCAGTTCCTGCTCCAGCTCCTCCTCCAGCCCGCATGGTGAACCTCTGCTCCGCCACGCAGACCATCATCGCTCCCAATCCCATGCTGCAGGGGGCGCTGCTGATGCAACAGATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089781-2-2,3-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCTGCACACCACATC
R:
ATGGGATTGGGAGCGATGATG
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]