DreALTD0005404-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43223295-43224440:+
Coord C1 exon
chr19:43223295-43223445
Coord A exon
chr19:43223446-43223463
Coord C2 exon
chr19:43224254-43224440
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
ATGACTGTGTTTCTGTTCAGACT
3' ss Score
7.81
Exon sequences
Seq C1 exon
TGCATTTGATTACGATACGGAGAACATGAACTCTGAGGAGATCTACAGCTCTCTGAGAGGAGTCAGTCAGGCCATCCAGAACTTCAGCGTCCGCAGCCAGGAGGACATGACAGAGCCTCCACGGAAAAGAGAAGGAGACGGCGGAGAAGAG
Seq A exon
GTACGAAAGACGAATCAA
Seq C2 exon
ACTGTTGACTCTGGTCGGACGGCGCTGGATAATAAGACCTCTCTGCTGAACACTATGCCCCTCCTCTCCTCGAGTCCCCGCCCATCAAGGGATTACCAGCCAGTCAATTACTCTGACTCCTCCTTCGGCTCCTCCTCTTTTAATAAAAGCCTGAAAGATGCGGACCAAGAGGAGTCCCTCACTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345-55-55,56-55-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCACGGAAAAGAGAAGG
R:
GGAGAGGAGGGGCATAGTGTT
Band lengths:
106-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]