DreALTD0005827-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000075521 | cpz
Description
carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
Coordinates
chr1:40106798-40109177:+
Coord C1 exon
chr1:40106798-40106994
Coord A exon
chr1:40106995-40107033
Coord C2 exon
chr1:40109016-40109177
Length
39 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAAT
5' ss Score
3.59
3' ss Seq
GGAATCTGTCACCTTTTTAGGGT
3' ss Score
8.19
Exon sequences
Seq C1 exon
TGGAGCCAGAGATCAAATTAATTGGAAACATGCATGGAAATGAGGTTCTGGGCCGACAGCTTCTGATATACCTTGCTCAGTATCTGTGCTCCGAGTATCTGCTGGGCAATGAGCGAATTCAGACCATCATCAACACCACGCGCATCCACATTCTGGCCTCCATGAATCCCGATGGCTATGAGATTGCCGCTTCTGAG
Seq A exon
GTAGCCGATAGGAACGACCCCGAAAACATCTACCAGGAA
Seq C2 exon
GGTCATGAGTACAATGGATGGACCAGTGGCCGGGCCAATGCGCAAAATCTTGATCTGAACCGCAACTTCCCTGACCTCACATCCATCTTCTACAACCGGCGTCGTTTTCGACATTTTCGTAGTGACCACATCCCCATCCCTGACTCCTACTGGATGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075521-4-5,5-5,6-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.5=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGAGATTGCCGCTTCT
R:
GACGCCGGTTGTAGAAGATGG
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]