DreALTD0005865-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9677168-9677431:-
Coord C1 exon
chr3:9677351-9677431
Coord A exon
chr3:9677318-9677350
Coord C2 exon
chr3:9677168-9677224
Length
33 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTTT
5' ss Score
1.95
3' ss Seq
TTGCGCATCTCTTTTTGCAGTAT
3' ss Score
7.44
Exon sequences
Seq C1 exon
GTATCACTTCTGCGAGAAGTGCTTCAATGAGATTCAGGGCGACAGTGTCACTCTGGGGGACGACCCGACCCAGTCGCAGAC
Seq A exon
GTATGTATCATCTGCTGCCCAGAAGTCTTTGAG
Seq C2 exon
TATGATATCAAAGGAGCAGTTTGAGAAGAAGAAAAACGACACGTTGGACTCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148-21-25,22-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATTCAGGGCGACAGTG
R:
GGTTCAGAGTCCAACGTGTCG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]