DreALTD0005897-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000059826 | crtac1a
Description
cartilage acidic protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9704]
Coordinates
chr1:54269263-54270025:-
Coord C1 exon
chr1:54269925-54270025
Coord A exon
chr1:54269861-54269924
Coord C2 exon
chr1:54269263-54269456
Length
64 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
GAATATTGTTTGATTGACAGCTG
3' ss Score
5.3
Exon sequences
Seq C1 exon
GGTGTGTGATTGGTTCATGCTCCACGTCATTTAAAATGTTCGACAGTGATTGGACAGTCGCTTACACAAGCCCTTGTGTAAGGAGGCTGCGTTGAAGTTGT
Seq A exon
GTAAGGAGCGAAAAACACTGCATTAAAATAGGAAACCGCACACATTTCCCTGTTATTTTTTCTA
Seq C2 exon
CTGGAGATGAGGATGTGGTGGGCGTGTCTTCTCGCTCTGGGACTGTTTGCTGTCTCTCATGCTCAGCCCATGTTCTCTGTCACCACGGATACAGTTCTGCCTCCTGATGCCCTTCACAACCCCACCCAGCTGAATTATGGGATGGCGGTGACAGATGTAGATGGAGACGGGGATCTGGAGGTGGTGGTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059826-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF135171=VCBS=PU(18.3=20.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAAGGAGGCTGCGTTGAA
R:
GTTGTGAAGGGCATCAGGAGG
Band lengths:
146-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]