DreALTD0005900-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000059826 | crtac1a
Description
cartilage acidic protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9704]
Coordinates
chr1:54258568-54258893:-
Coord C1 exon
chr1:54258748-54258893
Coord A exon
NA
Coord C2 exon
chr1:54258568-54258610
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ACTGTGTTTGATGTTTGCAGTGT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GGACTGATGAGGCCACCAGCATTGAAGTCTATTGGCCGGATGGTCGCTCCATTGCTCGACCACTTGAGTCAGCAGATATGAACACAGTCATTGAGATCGCATATCCTAATGAGGGGGAGGAGTCAGCGCTCACATCTGACACACAG
Seq A exon
NA
Seq C2 exon
TGTGGAGAGGGATTCACAGTCAACACCAACGGCCGCTGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059826-16-15,17-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(42.9=61.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGCTCGACCACTTGAG
R:
GCCGTTGGTGTTGACTGTGAA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]