DreALTD0006067-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30584707-30585485:-
Coord C1 exon
chr2:30585312-30585485
Coord A exon
chr2:30585291-30585311
Coord C2 exon
chr2:30584707-30584857
Length
21 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTTTTTTTCTGCGCCTCCAGTGG
3' ss Score
8.23
Exon sequences
Seq C1 exon
TGGGATGGTGTTGGGCCTTTTCCCGACTCCAGTGACCCTCCGAAGGGACTACAGATGCTGTGGCACCCGTCCATTGTGAAACCGTACCTCACTCTGCTGTCTGAATGCTCGAACCCGGATACACTGGAGGGAGCGGCTGGGGCTCTACAGAACCTGGCAGCGGGTAGCTGGAAG
Seq A exon
GTAGGCCCCACCTTAAAGCCT
Seq C2 exon
TGGTCGGTCTACATCCGAGCTGCCGTTCGGAAAGAGAAAGGACTTCCCATTCTGGTGGAGCTGCTGAGAATAGACAATGACCGGGTGGTGTGTGCCGTGGCCACAGCTCTCCGAAACATGGCCCTTGATGTTAGGAACAAGGAGCTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779-25-23,26-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=64.6)
A:
NA
C2:
PF0051418=Arm=WD(100=78.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCGAACCCGGATACACT
R:
CCTTTCTCTTTCCGAACGGCA
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]