DreALTD0006528-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38808305-38810436:+
Coord C1 exon
chr7:38808305-38808614
Coord A exon
chr7:38808615-38808627
Coord C2 exon
chr7:38810328-38810436
Length
13 bp
Sequences
Splice sites
5' ss Seq
CTCGTATGT
5' ss Score
5.29
3' ss Seq
TATTTTGTGCTTGCTTGCAGGAA
3' ss Score
10.29
Exon sequences
Seq C1 exon
GGTTTGTTGGTGGGAGAAAGTATTCAGCCCCGGCCTCTTATCCGTGCACCTCGGTGTCTGAGGCGAAACTCCTCACACCTTCTCCCCGCTGAGGCCGTTTACAGAAGCCCAGCTTCTTATGGGCTGTATGGCCGTTACCGTAGGACCAGTCAGGTGCATAATATGGGTGGATTGTGGGCAGGGAAGAGAAGTTCTCTCGCAGCTCGTGGATCAGTTGCACTGTACAGGACGAGCCCCCCTTGCTGGCCAGATCTCAGTGTGTCGCACACACTTCAGGGAACTTACTACAACCCACAGATTGACACATGGA
Seq A exon
GTGGGTTCCTCTC
Seq C2 exon
GAAGGCTATTGCCAAGTCCGGTCTCCAGCACCTCTCATGCCAGCCCAGTGCTGCAGTGTTAGCCAAAGGGGAAACGGACAGAGAAATACGCAACACAGTAGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-5-2,6-2,7-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGGCCAGATCTCAGTG
R:
GAGACCGGACTTGGCAATAGC
Band lengths:
97-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]