DreALTD0006684-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000042291 | dlx6a
Description
distal-less homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-980526-448]
Coordinates
chr19:41879815-41881126:+
Coord C1 exon
chr19:41879815-41880523
Coord A exon
chr19:41880524-41880537
Coord C2 exon
chr19:41880938-41881126
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATTCACCCTTTTCAGAACAGCAG
3' ss Score
0.73
Exon sequences
Seq C1 exon
TTAACAGAATCCACCTTAAAATCTCTGCATTTACTCAAGCCCACCTTCCACCATACCGCGTGAGAATTACAGGACAAAAAAGGATAAATTGTGGAGGTAATAACGCAATATCTCCTAACCAAGGAGAGAAAGAAACGAACACAGCGAAAGGACTCATTTGGACTTCTGAGATAGGGGGTAAGTGCTCTCAAAGCAGAAAATTTGATGATGACCATGACTACGATGGCTGACGGTCTGGAGGCTCAAGACTCGTCAAAATCTGCTTTCATGGAGTTTGGACAGCAATCGCACTCACAACAGAGCTCCCCGTCGATGGCCGCCAGCCATTATCCGCTCCACTGTCTCCATTCCGGCTCCCATCATCATCATCAGCACGACAGCTCTCCGTACTCCGGCTCGAACTCATATAACAGGTCGCTACCTTACTCTTATGTGAGCCATCCGCACCACAGTCCGTACCTGCCGTCCTACCACAGTAACGCCAGCGGAACACAGACCAG
Seq A exon
GTTAGACGCTACAG
Seq C2 exon
CAGAAAACAACAGTGATTGAAAACGGTGAAATACGTTTCAACGGAAAAGGCAAAAAGATAAGAAAACCAAGGACGATTTATTCCAGTTTGCAGCTTCAGGCATTAAATCACCGTTTCCAGCAGACTCAATACCTGGCATTACCGGAGCGCGCGGAGCTGGCTGCCTCACTCGGGCTCACACAGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042291-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=64.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATGTGAGCCATCCGCACC
R:
TCACCGTTTTCAATCACTGTTGT
Band lengths:
102-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]