DreALTD0006707-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34458472-34458983:-
Coord C1 exon
chr11:34458883-34458983
Coord A exon
chr11:34458802-34458882
Coord C2 exon
chr11:34458472-34458641
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
ATATTACGGTCTGTGGATAGGGA
3' ss Score
5.99
Exon sequences
Seq C1 exon
CCTTAGCAACCACCGTCACTAAATGACAGTAAAATATATTAACCGCCGTGGAAGACGAAAATAAACACGACATACTCATTAGCCGTGTTAATTTACCGAAG
Seq A exon
GTTTGTACTTTTTATATCTTCCAATAACTTTATGCCTCTTAATTTACGGGATGCCTGTCAGCTGCTGTGATTTGAAGTGAG
Seq C2 exon
GGATTATGGACAATAAACTGACGAAAAGTGAAATACCTCTTTACGGATCTGGCATGTTTCACCCTAAACCTCCAAACAAGTCTAGAGAGACTCACAGGGGCAAACTTCTGCCTTTAAGGGGCATCTACTCTGAGCTCATAACTAACATTAAATCAGACAAAACACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.441
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGACATACTCATTAGCCGTGT
R:
TGAGCTCAGAGTAGATGCCCC
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]