DreALTD0006918-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000024865 | dscama
Description
Down syndrome cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-050310-7]
Coordinates
chr10:38944419-38947553:+
Coord C1 exon
chr10:38944419-38944708
Coord A exon
chr10:38944709-38944715
Coord C2 exon
chr10:38947278-38947553
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
3' ss Seq
GAGAAGTGTTTCTGTTTAAGGTT
3' ss Score
6.43
Exon sequences
Seq C1 exon
ATGGAACGCCGAAGATCTTGTCCGCCTTCAGTGAGAAAGTTGTTGGTCCCAATGATTTTGTCTCGTTGACGTGTCATGTAAAGGGAACTCCGCAGCCGGCCATCACCTGGACGCTGGACGATGAGGTTGTGGCCAAAGACAGTCGCCACCGTATCGTTCACAGCATAACGGCAGAGGGGAACGTGGTCAGCTACCTGAACATCTCCCACATCCAGGTCCGGGACAGCGGGGTCTATCGCTGCACATGCAATAACTCGGCGGGGACGGTCTCCTACCAGGCTCGAATAAAC
Seq A exon
GTAAGAG
Seq C2 exon
GTTCCGCCGACATTCGACCAATGAAAAACCTCACTGCCATAGCTGGGTGGGACATGTACATTCACTGCCATGTGATTGGCTACCCATATTACTCCATCAAATGGTTCAAAAACTCCAACCTCCTCCCTTTCAATGACCGTCAGCGAGCATTTGAGAACAACGGCACGCTGAAGCTGCTGAACGTGCAGAAGGAGTTGGATGAGGGCGAGTACAGCTGCCATGTGCAGGTGCAGCCGCAGCTCTTCAAGAACCAGAGCGTCCACGTCACGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024865-6-8,7-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=PU(97.8=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCAATAACTCGGCGGG
R:
TGTACATGTCCCACCCAGCTA
Band lengths:
108-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]