DreALTD0006921-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6238508-6246378:-
Coord C1 exon
chr15:6246089-6246378
Coord A exon
chr15:6246082-6246088
Coord C2 exon
chr15:6238508-6238780
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
3' ss Seq
ATGTTTCTTTCTCAAAATAGGTC
3' ss Score
10.4
Exon sequences
Seq C1 exon
ATGGGACACCAAAGATCCTCTCTGCCTTCAGCGAGAAGGTTGTGAGCCCGAATGAGCCCATCTCGCTGGTGTGTCACGTGAAAGGAACCCCCCTCCCCACCGTCACCTGGACCCTGGACGACGACCCCGTCATCAAAGACAGCAACCACCGCATGGACCGCATCATCACCACAGAAGGCCACGTGCTCAGCTACCTGAATGTTTCTCACACGCAGGTCAGCGATGGGGGGGTCTACCGCTGCACCTGCAACAACTCGGCCGGATCGGTCTCCTATCAGGCTCGAATAAAC
Seq A exon
GTAAGAG
Seq C2 exon
GTCCTGCCAGTATTCGACCAATGAAAAATGTCACTGCCATCGCTGGGAGGGACACGTACATACACTGTCGCATCATTGGTTACCCGTACTACTCTATTAAGTGGTATAAGGATTCCAATCTGCTCCCATTCAACCATCGCCAACGTGCCTTCGAGAACAACGGCACACTCAAGCTGTCCAATGTGCAAAACTCAGACGAGGGAGAGTATACATGCTACGTGTTGGTGGATCCAGAGAAACAAATTCACAGGAGTGTCCATGTGACAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-6-7,7-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=97.8),PF126033=DUF3770=PU(48.8=64.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGATCGGTCTCCTATCAGG
R:
TATGTACGTGTCCCTCCCAGC
Band lengths:
94-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]