DreALTD0006923-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12164522-12167290:-
Coord C1 exon
chr15:12167144-12167290
Coord A exon
NA
Coord C2 exon
chr15:12164522-12164677
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AAATGTTCTTCACATCTCAGAAT
3' ss Score
5.29
Exon sequences
Seq C1 exon
TTCCCAGCCAGCCACCCCAGAATGTTCGGGCCATAACAGTGACATCAGATGAGGCAGTGATCACGTGGTCTGAGCCCCCAAGGATGACCCTGAATGGGGTTCTGAAGGGCTACCGTGTGGTGTTCTGGTCCCTCTACCCCGATGGAG
Seq A exon
NA
Seq C2 exon
AATGGGGAGAGATGCAGAACATCACTACCACTCGTGAGCAGGTGGAACTGAAGGGGCTGGAGAAGTTCACAAACTACAGCGTTCAGGTCCTGGCCTACACACAGGCAGGAGATGGGGTCCGCAGCAACGTTCTCTACATACAGACCCGAGAAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-22-19,23-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(52.3=92.0)
A:
NA
C2:
PF0004116=fn3=PD(46.6=77.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGGGGTTCTGAAGGGC
R:
TGAACTTCTCCAGCCCCTTCA
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]