DreALTD0006924-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12181376-12186221:-
Coord C1 exon
chr15:12185932-12186221
Coord A exon
NA
Coord C2 exon
chr15:12181376-12181648
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
CTCTCTTCTCTCTCTTGCAGGTC
3' ss Score
15.51
Exon sequences
Seq C1 exon
ATGGCACCCCAAGGATTGTCTCGTCTTTCAGTGAACGAGTGGTAGCCCCTGGCGAGCCCTTCTCTCTCATGTGTGCAGCCAAAGGTGCCCCTCCACCCACCATCACCTGGACACTGGATGATGAGCCGGTAGCGCGGGACTCGGCGCACCGGGCCAGCCAGTACACGCTCTCCGACGGCTCCACTGTCTCACATGTCAACGTCACCAACCCCCAGATCCGCGACGGGGGCGTGTACCGCTGCGCCGCACGCAACTCGGCCGGTAGCGCCGAGTACCAAGCGCGCATAAAC
Seq A exon
NA
Seq C2 exon
GTCCTCCCAGTATCCGGGCCATGCGGAACATTACAGCTGTGGCTGGACGTAACACATTCATTAATTGTCGTGTGATTGGGTACCCCTATTACTCCATCAAGTGGTATAAAGATGGGATGCTGTTACCAGACAACCATCGCCAGGTTGTATATGAGAATGGCACTCTGAAGTTGAGCGATGTGCAGAAGGGCATGGATGAAGGGGCGTATCTGTGCAGTGTGCTCATCCAACCCCAGCTCTCCATCAGCCAGACTGTCTATGTCACAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-7-7,8-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTACCAAGCGCGCATAAA
R:
GGTACCCAATCACACGACAAT
Band lengths:
106-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]