DreALTD0008150-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000016427 | fignl1
Description
fidgetin-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1862]
Coordinates
chr13:15802138-15812912:+
Coord C1 exon
chr13:15802138-15802238
Coord A exon
chr13:15802239-15802277
Coord C2 exon
chr13:15810860-15812912
Length
39 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TGTGTCCACTTCTTATGCAGGCT
3' ss Score
8.55
Exon sequences
Seq C1 exon
TTCGCGCGCGCCGTAGAGGCTGGAGGCGGGAGCTTTAGTCAACTTTATGGTTGTTTTGTTTCGTGTCCATCATTTACACGAGAAATACGTTTAACCCAGAG
Seq A exon
GTATGTTGCTATTTTCCTCAACCAAAAGTAAATGAAAAC
Seq C2 exon
GCTGGAGCAGGCCAGGCATGAGCAGAGCACACCTGGACGAGTGGCAGAGGAGGTCCTTTGACATTTCGTCTGGCTCCTGTACACCTGAACAGACGGCCGATGCTTATCGGGCACACATCTTGTCCATTCAGTATGCATGGGCGAATGCTGAGCTCTCTCCGGCCGGAGCTGCCAGCCTGCTCAGGACCTACACCGAGCGCTATGCCGCAGTCCTTGACTCAGACGACCCATACAAAGGACTAAACAACTACGCAGAGACTGCCCTGCACCTGGCCCGCAATCAAAAGAACCATAGCGACAAATGGGAATCGTCCCTAACACTCGAGAATGTGTTCAACTTGTCGTGCGTGCAGAAGATGATACAGGCCAGGTCAGATGGATGCGCTCTCCCTGTAGATCCAGCAGATGTTAACATCTCTGTCGGTGGTGAGGTTAGTGGGGGTGGAGAGAAAGGCAGTTCTCTCTCTGGTCCTCCCTCCGGATTAAAGCAAGAGCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016427-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.8),PF093365=Vps4_C=WD(100=7.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCCATCATTTACACGAGA
R:
TCAGGTGTACAGGAGCCAGAC
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]