DreALTD0008320-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000090431 | ftr04
Description
finTRIM family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-226]
Coordinates
chr2:59057953-59060074:-
Coord C1 exon
chr2:59059974-59060074
Coord A exon
chr2:59059690-59059973
Coord C2 exon
chr2:59057953-59057993
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGTT
5' ss Score
1.87
3' ss Seq
GTTCACCTGGCTAAACAGCACAC
3' ss Score
-28.72
Exon sequences
Seq C1 exon
TCTGCCGCACTGATCACTGCTGTATTTGTTATCTGTGTTTGGTTGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTACAG
Seq A exon
GTTTGAACACACTTATGCTCAATTATTAATAATGTCTCTTCATTTCTCCACTTTTAAAGCTGTTTCTCTGATCTTCTCTCCAGCAGACACATGTAATAGACTTTGGTCAGGGTGGTGTCATATTAATGTTTGACAGGAATCAAAACACCTGTGAGGGACTAAAGTACAGTGTGTTCAGTGAATTACTGTTTAATTGACTAAATCCCCGTAAAATCCCACATTCACCAATAATACAGCATTACAGATTCTACATCACAGAGCTCAACAGTGTTTTATATCAACAG
Seq C2 exon
CACACACACACACACACACACACACACACACACACACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090431-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=21.8),PF0149614=V_ATPase_I=PU(71.9=67.5),PF143621=DUF4407=PU(29.3=33.0),PF0064319=zf-B_box=WD(100=20.8),PF0144213=Apolipoprotein=PU(10.5=7.6),PF049068=Tweety=PU(1.5=0.5)
A:
NA
C2:
PF039618=DUF342=FE(7.9=100),PF156191=Lebercilin=FE(15.1=100),PF039389=OmpH=PD(1.6=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGCACTGATCACTGC
R:
TGTGTGTGTGTGTGTGTGTGT
Band lengths:
140-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]