DreALTD0008340-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8859274-8861910:+
Coord C1 exon
chr2:8859274-8859333
Coord A exon
chr2:8859334-8859342
Coord C2 exon
chr2:8861753-8861910
Length
9 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGT
5' ss Score
4.58
3' ss Seq
TTATGATTCTCTCTTCTAAGGTC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTCAAGGCCAGCCTCAGCAGGACTACACCAAGGCGTGGGAAGAGTACTATAAGAAGCAAG
Seq A exon
GTGAGCTAA
Seq C2 exon
GTCAAGCTGCTCCTCAAGCAGCTGCAGCAGCAACGGCAACACAGCCCGGAGGTCAGCCGGATTACAGTGCAGCGTGGGCCGAGTATTACCGCCAACAGGCCGCCTACTATGGTCAAGGAGCCCCTCAGGCAATGGGTGGTGCACCCCAGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-19-21,20-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.755
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=WD(100=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGCGTGGGAAGAGTACT
R:
CTGCACTGTAATCCGGCTGAC
Band lengths:
105-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]