DreALTD0009374-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000103658 | hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-070912-512]
Coordinates
chr19:3541077-3547598:-
Coord C1 exon
chr19:3547498-3547598
Coord A exon
NA
Coord C2 exon
chr19:3541077-3541240
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTATCTCTCTTCTGTCCCAGATG
3' ss Score
10.74
Exon sequences
Seq C1 exon
TGTCGGTTTCCTGCAATAGAAAGTGAGAGAAGATACAGCGAGAGAGAGGAAAAACAGACCTCTGACCGTTGAAACCCTTGACAACAGTTCAGACTGCACAT
Seq A exon
NA
Seq C2 exon
ATGTGCGGAGATCATCTTTTCTGTGTGGAATAGGAGATCGGCTTTCCTCGCATTCCAGCCAGCATCTTTCCTTATGATGTTTCACTGAGCCAGCGGAAAAAAAAAACACAAAACACCCAAGAAAATGCCACGTACCAAGCAGAACAACCCCAAAAACCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103658-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGGTTTCCTGCAATAGAAAGT
R:
TCAGGTTTTTGGGGTTGTTCTG
Band lengths:
262-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]