DreALTD0009375-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000103658 | hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-070912-512]
Coordinates
chr19:3443817-3447861:-
Coord C1 exon
chr19:3447317-3447861
Coord A exon
NA
Coord C2 exon
chr19:3443817-3447051
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTGCTATTGTTTTAACAGGAT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GGGATGACTCTGATGGCCCAGATGATGAAGATAATGAGGGAGAGGAGGAAGATGAGGAGGACAGCCAGGCAGAGTCTGGCCTTTCTGCTACACCTTCCGTTTCTGCAAGCCCACAGCACTTTTCTGCTAACCAGGCTGATTTGGCTCCCAGCTCTTTACTGGCTCAGATGTCCATCAGCCCAAATCCATCCCCAGCTCTGCAATCTCAGCCTCCTCCTACTTCGGACTCCCAGACATCAGATACAGAATCTGTGGCTATGACAAGCCCAGTTTCTTTGGTCAGACAGATGTCAATTTCTGCATCCTGTTCCAGCCCCGGCCCTAATCCAACCTCTTTTACATCCCACCCGACCCCTGCCTCAGAATCCCACACCTCTGATACTGACTCCGTACACATGATGAGCCCAGTGTCACCATGCAGGCAGATGTCTATCGACTACCCAGACTTTGATGTTCCCCCTAGTCCCCCAGTGTCAGGCAAGGGTGCCAAGCTCGGCCAG
Seq A exon
NA
Seq C2 exon
GATGGAGTGTCAAGTACGATATCCCAGCCTGCAAGTGAGTGCAATGCCAATGTCGACCGTGGTACTCAGACCTCGTCTGACCCTCTTCAGGGATCCTTACACTTTCCACACGCAGGTCCGCTCCATGAACCCAGAATAGGAGCCACTACTCATCTCTTCAGCCACCTGCCCTTGCACTCCCAACAACCTCCTCGTTCCCCGTACAGCATGGTACCTGTGGGTGGCATCCAGCTTGTCCCTGCCGGTTTGGCTGCTTACTCGACATTTGTACCAATTCAAGCTGGACCAGTTCAGCTGACCATCCCAGCACTTAGTGTGATCCACAGGCAGACCGGCAGCCCCCTCTCAGCACCCAACACCTCACCCCGGCCAGATTGTTCCCCAACCCAGCCACTGGTAGTCCAGGAGCCAGTCAGCAGTGTACTGCCTTGTTTCCCCCTTGGCCAAGTGGCAGGGCTTCAGACACTTGGTGCTCACCAGACCGCCCTGCAGCCTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103658-18-10,19-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.645
Domain overlap (PFAM):
C1:
PF065247=NOA36=PD(36.5=29.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCATCCTGTTCCAGCC
R:
CACTTGCAGGCTGGGATATCG
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]