DreALTD0009472-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000036675 | hnrnpa1b
Description
heterogeneous nuclear ribonucleoprotein A1b [Source:ZFIN;Acc:ZDB-GENE-030912-14]
Coordinates
chr23:36209479-36209798:+
Coord C1 exon
chr23:36209479-36209484
Coord A exon
NA
Coord C2 exon
chr23:36209607-36209798
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGACT
5' ss Score
4.06
3' ss Seq
TTATTTTTGGCATTTTCTAGGTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GAGGCG
Seq A exon
NA
Seq C2 exon
GTGGCTACGGCGGTGGTGGCGGCAATGGTGGTGGCAGTCCTGGCAACTATGGAGGCAACCGTGGATATGGAGGAGGCGGTGGAGGAGGACATGGTTATGGCAACCAGGGAGGAGGCTATGGTGGTGGCAACAGTGGTGGCGGTGGTGGTGGCTATAATAACTACAACAATGGCAATGGAAACTTTGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036675-12-18,13-18,14-18-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]