DreALTD0009633-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000055723 | hsp70l
Description
heat shock cognate 70-kd protein, like [Source:ZFIN;Acc:ZDB-GENE-050321-1]
Coordinates
chr8:4741860-4744644:+
Coord C1 exon
chr8:4741860-4741960
Coord A exon
chr8:4741961-4741990
Coord C2 exon
chr8:4742448-4744644
Length
30 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
3' ss Seq
AATTGTTTTTTTTATTGCAGTTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
GTATTTAAAGGGCGAAAGAGAGACCGCAGAGAAACTCAACCGAAGAGAAGCGACTTGACAAAGAAGAAAAGAGCAGCCTGACAGGACTTTTCCCCGACGAG
Seq A exon
GTGTTTATTCGCTCTATTTAAGAATCTACT
Seq C2 exon
TTTCTTGAAATCAATCATGTCTTCTCCAAAAGAAATCGCTATTGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGGAAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGAACAACACCCAGCTATGTTGCCTTCACAGACACAGAGAGGCTGATTGGAGACGCAGCTAAAAACCAGGTGGCCATGAATCCCAACAACACGGTGTTTGATGCCAAGAGGCTGATCGGCAGGAGGTTTGATGACCCTGTAGTGCAGTCTGACATGAAGCACTGGTCCTTCAAAGTCGTCAGTGATGGAGGAAAGCCAAAAGTTGCAGTGGAACACAAAGGAGAAAACAAGACCTTTAATCCTGAAGAGATTTCCTCCATGGTCCTGGTGAAGATGAAGGAGATTGCAGAAGCTTATCTGGGGCAGAAGGTGACCAACGCAGTTATCACAGTTCCAGCCTATTTCAACGACTCCCAGAGACAGGCCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055723-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=WD(100=94.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGACAGGACTTTTCCC
R:
AAACACCCCCACACAGGAGTA
Band lengths:
113-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]