DreALTD0009867-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13713911-13714256:+
Coord C1 exon
chr3:13713911-13714024
Coord A exon
chr3:13714025-13714054
Coord C2 exon
chr3:13714133-13714256
Length
30 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
3' ss Seq
TGTGATTTTGTTTTTGTCAGCAC
3' ss Score
5.91
Exon sequences
Seq C1 exon
GTTGAGATCGATGGACAGAAGTTTCAGGGTACTGGATCCAACAAAAAGGTGGCGAAGGCGTACGCAGCCCTGGCGGCTCTGGAGAAACTGTTCCCAGAAGGCTCCAACTCTGAG
Seq A exon
GTGAACAAGAAAAAGAAAATGCCTCCAATG
Seq C2 exon
CACACTGGATTTGGGATGGTGAGCGGGCCACCCTCTGACATGATGCCTAATCCAAGGGGCAGAGGAAGAGGACGCGGCAGGGGCCGAGGACGGGGATTCAACAACGGTGGAGGATTTAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-19-29,20-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=NA C2=0.913
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(46.0=76.3)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGGCTCCAACTCTGA
R:
GTTGTTGAATCCCCGTCCTCG
Band lengths:
127-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]