DreALTD0009934-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64392483-64396247:-
Coord C1 exon
chr5:64396147-64396247
Coord A exon
chr5:64396119-64396146
Coord C2 exon
chr5:64392483-64393324
Length
28 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TAATCTCGTTGTCTCCACAGGAT
3' ss Score
9.78
Exon sequences
Seq C1 exon
AAACGCAAGATGGCGCTGATAACTAAAACACCAGCGCGGACTGTCGGCGCCTCTTCTTGAGGAGTTGTTGTTTGCCTGTCTGGCGTTGCTAAGGAAGTCAA
Seq A exon
GTAAGTTTTCTTCATCTGCGAACTGGAG
Seq C2 exon
GATGTAATCAGCAGAGTACCATGGGGCTTGTTTACATCTAAAATCAAGCCCGCCAATAGGATGAGTGAGCATGGAGACAGCATTGTCCCATTTAACCCCACAGATCTCAGGTCAGGAGAACCAGCCACCAAAACGGACATCACTGTCCTGAGTGTAGACCTGAGGACAGAGAAGAGCCACAATGAGGAGCTCAGAGACATTAAGAAGCCATACGATGGTCCTAAAGTACTTCAGGATGAGCATAGTCTCTATCAGCCTCGACCTCCCTCTCTTCCGAAGCCCATGGGATTGGGAATGGGGGGTAAAAACCTCTCGTTTGATGAAAAGGTGAGGGGAAGGAGATTGAGGAACAGCCAGGAGAGTCTCACGGATCCGGGAGAGACGGGTTCTTCTACTGATTCTCTCAAAGATGTTGCCTCAGCAAACGGTCAAACCCTTGCATCTCGACGTCCTCTCGATCTCCAGCACATGGAGATGCCACCGTTCAGGATTAGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926-1-1,2-1,3-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.768
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCGTTGCTAAGGAAGT
R:
GGGACAATGCTGTCTCCATGC
Band lengths:
113-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]