DreALTD0010124-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35703644-35707350:-
Coord C1 exon
chr11:35707255-35707350
Coord A exon
NA
Coord C2 exon
chr11:35703644-35703688
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTGTCTTTTTGCATTCACAGGTC
3' ss Score
10.42
Exon sequences
Seq C1 exon
GTGGTCCAGCATGACCCATGTCGTGGCGGCGCCGGTTACTGGAACAGTCTGTTCAGATTTAAGCATTTGGCCACAGGACATTATCTGGCCGCAGAG
Seq A exon
NA
Seq C2 exon
GTCAATCCTGACTATGAGGAAGAATCGCAGGAATCCCGTTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-9-10,10-10,11-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.733
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(14.6=100)
A:
NA
C2:
PF0281514=MIR=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCCGGTTACTGGAAC
R:
CGGGATTCCTGCGATTCTTCC
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]