DreALTD0010154-3/5 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000019614 | jade3
Description
jade family PHD finger 3 [Source:ZFIN;Acc:ZDB-GENE-030131-928]
Coordinates
chr6:37500876-37502201:-
Coord C1 exon
chr6:37501198-37502201
Coord A exon
chr6:37501192-37501197
Coord C2 exon
chr6:37500876-37501123
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGTGTGTGT
5' ss Score
-1.13
3' ss Seq
GTGTGTGTGTGTGTGTGTGTGTT
3' ss Score
-6.78
Exon sequences
Seq C1 exon
TCAGTCGATCTCTCAAGGAGGCCACTGTGAGTTTAGTACGGACCGAGGACCTTCGGACCTTTGAAAAGAACTCACGCAAGTCCTCCGGATTCTCAAAACCTCTTTCCACCGAGCGGCCGCAAGGGGGCGGCAGAGCGTCTCAGGAAAGCGATGGTTACTGTCCGGATGCAGAGCTCAGTGATTCTGAACCCGAAGCCAAAGGGAAGTGCAGGCAAGGAGGAAGGACTCAAAACCAGAGAGGAGATTATGTCAAGTCTGCCAGTCGAGCAAAACACTCTTATGGCTCTAGGACATCGGTGCAAAGGTGACAATCTTCAAAAAGCATTACAAACATCCCACTGCCACAAGTTATTATGGTTTCTTAGACTTCTGGTGGTACATCGGAAGTGCCAGATTCTAGTTTTCCTCTGTTGAGGATCATTTGTTTGCTTTTTGTTGAGTGCCAAAACATGGCTGGCTGGTTGGGGAAGTGAAGTTAGTCTATTTGTGTGTGTGTGTGT
Seq A exon
GTGTGT
Seq C2 exon
GTTGGGACTGATTTATCACTGTGTTTTCTATCCTGCCGATGTGTTTCTGCTGCCCTTGGACTCATGAGAGTATTATGGGTGGTGAAGCAGTGTTGTACATAAAAAGCAAGGTCGTTTTTTTAGACTGTACATAGTAGTTCGTGTTGAGACGTGGAAAACATTGAGGTGTTTTCCACGTACAGAAACATCATACTTTCTTACTGACATGCTTATGCAAAAAAAATAAAAGACTTGAGGACTCTGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019614-20-16,21-16,22-16,23-16,24-16-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.799 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACATGGCTGGCTGGTTG
R:
GCAGAAACACATCGGCAGGAT
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]