DreALTD0010523-4/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078475 | klhl23
Description
kelch-like family member 23 [Source:ZFIN;Acc:ZDB-GENE-081104-458]
Coordinates
chr9:48480629-48486997:-
Coord C1 exon
chr9:48486897-48486997
Coord A exon
chr9:48486765-48486896
Coord C2 exon
chr9:48480629-48481846
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
ATAATCCTCTCTTTTTCCAGTTG
3' ss Score
10.07
Exon sequences
Seq C1 exon
ACATAGGCTGAAAGACGCGGCTGTGTTGGATCACTCTATAGCTGGTGACAGCAGCAAGTCTCCGGCTTTCAACTGAGACCAAAATAGGAGCTCGACATTTT
Seq A exon
GTAATCCTGCAGCCGACGCCAAATATACAGGAGCCACACATGTCTGATTTGGCCAAACACAAGGCGCTCTGTTGGGGATACAATCTATTCGGTGAGCTAAGGACAAGCTGAGTTAACTAGATAGATGGTCAG
Seq C2 exon
TTGCGATGTCCGGGAATGCTCAAAGCGGTTACTCCTACGACTTCTACGATGCCTCTCACCCTTCAGAAGTGCTTGAAGCTCTTCACGAGTTTCACAACAGCGGCCTGTTCACCGACATCGCCCTGCAGTCCTCATCGGGACAGCTCTTCCACTGCCACAAAGCCGTCCTATCAGCGCGCAGCTCCTATTTCAAAGTAATGTTCACCTTAGACATGAGAGAACGTGCGAACGACACCATCAACCTACCTTGCGTAGACGGAGAAATTTTGGGTGCTTTGGTGACCTACGTGTACACCGCCAAAATCGGCATAACTCAAAACAACGTACAACGTCTACTGGAGGCCGCAGACCTGCTGCAGTTCAACTCGCTCAAGAAAGCCTGCGAAAACTTTTTGATTCGTCTGCTAGATGTTGATAATTGCCTCGGGATGCATTCGTTCGCTGAGCTTCATGTTTGTTCAGCATTGGAAAGAGCGGCTTTGAGGATCATCCTGAGTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078475-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=24.9),PF0134420=Kelch_1=WD(100=8.1),PF0134420=Kelch_1=WD(100=11.9),PF0134420=Kelch_1=WD(100=11.4),PF0764610=Kelch_2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGTCTCCGGCTTTCAA
R:
CTTTGAAATAGGAGCTGCGCG
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]