DreALTD0010966-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36730210-36730827:+
Coord C1 exon
chr9:36730210-36730334
Coord A exon
NA
Coord C2 exon
chr9:36730456-36730827
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAG
5' ss Score
1.33
3' ss Seq
TTGTATGCTTTCGCATGCAGGCA
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGCTCATGCCAATGGATCAATCCGCCGTGGATTCAAGAGCGATGCCACCGATGCTGTCACCATGAGAAGCGGCCTTGGCGTCAACCTGAAGGATGTGAAAGTGTTTAACAAAGGCCGGGAGAAAG
Seq A exon
NA
Seq C2 exon
GCACCAACCCATGTGCGAGAAGTAATGGAGGTTGTCAGCAGTTGTGTTTTCACTTGGGCAGCGGACGGAGGACCTGTTCTTGCGCTCATGGCTATTTGGCCGAAGATGGCTTTGCTTGCCAAAGATATGGAGGCTATCTTCTGTACTCTGAAAGGACTATATTGAAAAGCATCCATCTATCTGACGAGAGCGATCTCAACTCCCCATTACAACCTTTCGAGAATCCGGACTACTTTAAGAATGTCATTGCTCTAGCGTTTGATTATCGGCAAGAGAGTTCACCGCACAATCGCATATTCTTCAGCGACATCCATTTTGGGAATATTCAGATGATCAATGATGATTGGTCTGGAAGACAAGTCATAGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-38-39,39-39,40-39-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCGTCAACCTGAAGGATG
R:
ACACAACTGCTGACAACCTCC
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]