DreALTD0010970-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000006921 | lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
Coordinates
chr25:10552397-10552900:-
Coord C1 exon
chr25:10552679-10552900
Coord A exon
NA
Coord C2 exon
chr25:10552397-10552539
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
AGTCTATCTCCGTGTCACAGGGA
3' ss Score
6.04
Exon sequences
Seq C1 exon
ACTTCCCACCACCACCCAACGATCTTCCACGTCACACCAGCACCATCGGCCCAGTCATCGGCATCATCCTCTCTGTCTTCGTAATGGGAGGCATGTGTTTCGTGTGCCAGAGAGTCGTGTGTCGTCATTACAAAGGCCCCAATGGAGGATTTCCACACGAGTACATCAGTGGGACGCCCCACGTGCCACTCAACTTCATCGCACCCACAAACTCGCAGCATG
Seq A exon
NA
Seq C2 exon
GGATATCATGTGGGAAGTCAATGATGAGCTCAGTGAGTCTGATGGGCAGCAGTAGCAGCGGAGCTCCTCTCTATGACCGAAACCATGTGACAGGAGCTTCATCCAGCAGCTCTTCCAGCACCAAAGGAGCATTTTACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006921-23-27,24-27-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTGCCACTCAACTTCAT
R:
TACTGCTGCCCATCAGACTCA
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]