DreALTD0011335-3/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47886336-47900428:+
Coord C1 exon
chr2:47886336-47886436
Coord A exon
chr2:47886437-47886532
Coord C2 exon
chr2:47899886-47900428
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATG
5' ss Score
2.37
3' ss Seq
TGTGTTTCTGTTTGTTTTAGGTG
3' ss Score
13.48
Exon sequences
Seq C1 exon
CGTAGCTGTCTGCGAGAGGCAAACGAGAGGGGAGAGAGAGAGAGAGATGTTGACGCAGGTTTTCACTTCTGTCTGAGTGCGTCACTCTTCCGTGCAGTCAT
Seq A exon
GTAAGTAAACGCCGAACACGCTCTCACTGCAGGGAGAAACATATGGATTCAGGTCCGCTCGATTTCTACGCTGAAGGGAAACATGTCAGATAACAG
Seq C2 exon
GTGGGTACTGAGTTTTGTGCCCTCTCTTGCGTCTGCCGCTGCTTGGACCTGCTTATAGTACCAGCCTCAGCTTTCCCGCCTGCTTGCTGCCCAAATCAGTGAACAAACTGCACCAGACCTCCTTGAACGACGCCTCAAACACAAAACAGCCAATCAGAGTCCAGGATTTTTTTTTATTGTTTTGCTTTTGGATTCCATCACTGCAGTTCACTTCAACATTTTTCTTTTTTTTTTTGTTCTTCTCGCTTTGGCCTGGTGTGCAAACCGTGGAGCTTCATGATCTAAGGCAGAGAGAGGAACGTTGGTAAAAAGTGACAAACATAAAGCACTTTTGGGATTGTAAGGATTCGAAGTCTAAAGCGTGCGGAGATGGCGATGAATATGGCTCACATGCGGGACACCAAATGGCTGACGCTGGAGGTGTGTCGAGAGTTTCAGAGGGGAACGTGCGCTAGATCTGATGCCGAGTGCAAGTTTGCGCATCCCGCCAAGAGCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978-1-1,2-1,3-1,4-1-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.083
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064219=zf-CCCH=WD(100=43.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTGTCTGAGTGCGTCAC
R:
TGTGTTTGAGGCGTCGTTCAA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]