DreALTD0011336-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000018460 | mbnl2
Description
muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
Coordinates
chr1:1964959-1981837:+
Coord C1 exon
chr1:1964959-1965086
Coord A exon
chr1:1965087-1965150
Coord C2 exon
chr1:1981175-1981837
Length
64 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
ACCACTGTCTTCTTTTCCAGATC
3' ss Score
13.13
Exon sequences
Seq C1 exon
GCTTTCTGCGCTGTTGCTGAGAGAAAATCCCTGTCTCGGCATGGGCCGCCAGCTCGCCGCTTCGCACAGGGAATGACAACGCTTCACATGCTCATTATATACCGGAAGGAGTCTGCTTTATACACCAG
Seq A exon
GTAAACTGAGAGGGAAGAAAAGAGTACAACGTGCAAAGGAAGGAGGCTTCGCTATTCCAGTAAG
Seq C2 exon
ATCCCGAACAGAAGAAAGTGCCTTCTCTAACGACGTTTCTACTTGAAGCTGCTCACCGTTCCCATCCTAAACTGTAAACAACACTGGCTTGGCCACCATTAAGATCTCCATTCCCTTTAGACTTGCCAAAGCACAAGGAACTGACACGCTCTTTCCATTATTAGATATCGTTTCAAGGAAAGCCATTGCCTTCAGATAGAGTCATCCGCAACCGTCTGGCTCAAGAACGTTTGGAGACCTGGAGCATGTTCTTATTGTCGCGCCAGTGTTGTGCACCTGGGACTAAATGACTGATGAACAACTTGGCAGAGATTGACAGCTTCACTGATAGCGGGCATCTCCAATGCGACAGCCACGGGGGCTCTGAATGTGACATCTCTATTTAAAGGGCCTCGCCAAACAAACTGAGACCAACCTCAAAAGTACAGCAACACACAAACGCGCAGACTATTTCAACCCAAATCAACAGACAACATTCACAACACAACTATGGCTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018460-1-3,2-3,3-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.145
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064219=zf-CCCH=WD(100=43.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTGTTGCTGAGAGAAAA
R:
AGGCACTTTCTTCTGTTCGGG
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]