DreALTD0011752-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17036566-17045546:+
Coord C1 exon
chr24:17036566-17037225
Coord A exon
NA
Coord C2 exon
chr24:17045371-17045546
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAATTGCTCTCTTTTTGCAGGGT
3' ss Score
9.6
Exon sequences
Seq C1 exon
AAGCGGAGCTTCTGAAAGCATGGTTGCTCTCAACACCTTCAGCATGATACCTCTTTCCCAAAGCTCAAGCTCCAGCTCCAGCAAGCATTATGAAAACTGTCACACGACTGGGGAGCTGGGCAGCCTGGCCTCAGCCAGCTACAAACGACCACAGCCCTCCTCGTCCTCTTCTTCTGCAACATCCTCTTCATCTACTGGCGAGGATGGAGTAAAGAAGAAAAAGAGAGGGAACTGGAGGAACCGATATGGACCTTGCTTCACCACCCAGGACAGTAAAACCACTGATGCGGGAGAGCACATATCCACAATGCCCTCATCCACTTCCCCTTCGCCATCCTCTATGAGTAACATGGTCTGCCGCGGGAGCACTGTCAGCAGTACTGCAAGTGTAGGAGCAGTGGGTGCTGGTACCAGTAGTCTGGGGATTCAAAAGTCCCCGTCCCTCCTCAGGAATGGAAGCTTACAGGGTATGACTGTCAGCTCCCCACCTGCCGTACCAG
Seq A exon
NA
Seq C2 exon
GGTCGTACCCCAGCAGCAGTGATGTTGCCTGTCCTTTGCCCAGCGCCGTGCTCGGAGGGTCTATGTCCGCCTCAAACTCTGAGTTGCCGGCTCATCAGTCAGTTGTTGTCACTTCTATGCCCACACTGACGTCACTGCCCTCGGCCGCCCCGTTCACAAGCACCCCATCCACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401-19-23,20-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACTGTCAGCTCCCCACC
R:
TTTGAGGCGGACATAGACCCT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]