DreALTD0011807-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000030350 | mnx2b
Description
motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
Coordinates
chr1:4754638-4757305:-
Coord C1 exon
chr1:4757205-4757305
Coord A exon
NA
Coord C2 exon
chr1:4754638-4754798
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGCGTGTGTTTGTCTTTCAGCTG
3' ss Score
11.43
Exon sequences
Seq C1 exon
GTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGATCATTACCGCTGGAGCATTGGATACGAGCTGGCATCATGGTACCACGACTGCCCGATTACACCT
Seq A exon
NA
Seq C2 exon
CTGCCCCTCAGTCTGGTTTGATGGGTAAATGTCGAAGGCCTCGGACAGCATTTACTAGTCAACAACTACTGGAGCTGGAAAACCAGTTTAAACTTAATAAATACCTTTCCAGACCCAAACGCTTCGAAGTGGCCACATCTCTAATGCTGACTGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030350-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF065247=NOA36=PU(34.8=88.9),PF0004624=Homeobox=PU(73.7=77.8),PF088806=QLQ=WD(100=51.9),PF090735=BUD22=PU(27.2=68.5),PF117053=RNA_pol_3_Rpc31=PU(25.7=51.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATTGGATACGAGCTGG
R:
GTAAATGCTGTCCGAGGCCTT
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]