DreALTD0012028-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25132443-25132785:+
Coord C1 exon
chr12:25132443-25132543
Coord A exon
chr12:25132544-25132615
Coord C2 exon
chr12:25132720-25132785
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTCCAC
5' ss Score
-3.25
3' ss Seq
TTATTTTGTTTTTATTTTAGTTT
3' ss Score
9.41
Exon sequences
Seq C1 exon
TCTGTAGACTTCATTCACCCTCCTTCTTCCTTCCCTCCTCTTTTCTCTCCTCCTCTCATCTCATCATCAGGAAGCTGCTGCGCTCGAGCCTTTTCTAGCGC
Seq A exon
GTGAGTGAGTTACTGTATTGTACTGTGAATCTCGGGAGGGGGGCTGCAAAAAAATCTCCTATTCTTACTGAG
Seq C2 exon
TTTATGGTTTGGTTTTTTAACACTCCGGGAGGGCAGAAATGGCGGCCAACATGTACCGGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903-0-1,1-1,2-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.444
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0142613=BAH=PU(4.2=60.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAGACTTCATTCACCCTCCT
R:
CGACCCGGTACATGTTGGC
Band lengths:
164-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]