DreALTD0012081-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000070412 | mtmr7b
Description
myotubularin related protein 7b [Source:ZFIN;Acc:ZDB-GENE-050913-66]
Coordinates
chr1:15791274-15794852:-
Coord C1 exon
chr1:15794726-15794852
Coord A exon
chr1:15794698-15794725
Coord C2 exon
chr1:15791274-15791803
Length
28 bp
Sequences
Splice sites
5' ss Seq
AAGGCATAC
5' ss Score
-0.11
3' ss Seq
AAACGTACTCACCTTAACAGAGA
3' ss Score
4.97
Exon sequences
Seq C1 exon
GTTTTGGAAGGGGATGTACGGCCGTGCAGAGAGAAGTTTGTCTTCTCAGCAGTCTCCAGCAGACTGTCTGAACGCAGTGAGGGAGGAGTCACAGCAGCTGGAGGAGGAGCTTACAGCCCACCAGGAG
Seq A exon
GTACCGCGGGAGACGGACGCTGGCCAAG
Seq C2 exon
AGACTTGCCCAGCTGAAGGAGAAGAAAACTTCAGGGGAGAGGAAGAAGATCAGCAGGTTGTCTGAACGCGCTCGCCGTCCCACTCCGAATGAGGGTGAACTCGACAGCCCTCAAGACTACTTCAGCACCCCGAGAGGCGAGAAACACACTCCTTCCTTCACACTGCCGCTAGATCTAGCAGCCCAGACCAAGAACGGTGACCCTGATGACCTTTCAACCTGCAGTGATTTGGAGTCAGGGGTGGCTGATCTCAGCAGCCACTCCTCCAGTGTTGGAGATGACAATAAAGACCCCGATTCTGAAGAGGTGGTCAAAATACCTGCCTGAATTGAACAGAACTGGTAACAATGAGGGATAAAAGCATAGTAACGGGTACCGAACTGGGAACTGTGCTGTTTTTTAAATGTTATTTTATTTTAAATGAACGTGTGAATTTATATTTAAATACAGTACGAGCACAAATACACATATCATGAAACAGTCTGAGGAAAAACACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070412-18-20,19-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTCAGCAGTCTCCAGCA
R:
TCTTCTCCTTCAGCTGGGCAA
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]