DreALTD0012180-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24972738-24974073:-
Coord C1 exon
chr11:24973930-24974073
Coord A exon
NA
Coord C2 exon
chr11:24972738-24972894
Length
0 bp
Sequences
Splice sites
5' ss Seq
TATGTTGGT
5' ss Score
-9.36
3' ss Seq
TTGTCATCTCCTCATGGCAGACG
3' ss Score
7.5
Exon sequences
Seq C1 exon
TGCTTAACTGTCAAGGAAGATGACATTCAACAGATGAACCCGCCAAAGTTTGACCTGATAGAGGACATGGCCATGCTCACACACCTGAACGAAGCGTCGGTGCTCTTCAATCTGCGGAGGCGATACAGCAGTTGGATGATTTAT
Seq A exon
NA
Seq C2 exon
ACGTACTCTGGGCTCTTCTGTGTGACCGTGAACCCATATAAATGGCTCCCCGTCTACACTGCCCCTGTAGTGGCTGCCTACAAAGGCAAACGCCGCTCGGAGGCTCCACCTCACATCTACTCCATTGCTGACAATGCCTACAATGACATGTTACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-2-3,3-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTCACACACCTGAACGA
R:
GGGTTCACGGTCACACAGAAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]